Adipose cell-free DNA in diabetes

Humardani, Farizky Martriano and Mulyanata, Lisa Thalia and Putra, Sulistyo Emantoko Dwi (2023) Adipose cell-free DNA in diabetes. Clinica Chimica Acta, 539. pp. 191-197. ISSN 1873-3492

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Abstract

Cancer-associated necrosis is a well-known source of cell-free DNA (cfDNA). However, the origins of cfDNA are not strictly limited to cancer. Additionally, dietary exposure induces apoptosis-induced proliferation in adipocytes, leading to the release of cfDNA. The genetic information derived from cfDNA as a result of apoptosis-induced proliferation contains specific methylation patterns in adipose tissue that can be used as a marker to detect the risk of developing Type 2 diabetes Mellitus (T2DM) in the future. cfDNA is superior to peripheral blood leukocytes (PBL) and whole blood samples for reflecting tissue pathology due to the frequent use of PBL and whole blood samples that do not match tissue pathology. The difficulty of demonstrating that cfDNA is derived from adipose tissue. We propose several promising techniques by analyzing cfDNA derived from adipose tissue to detect T2DM risk. First, adipose-specific genes such as ADIPOQ and Leptin were utilized. Second, MCTA-Seq, EpiSCORE, deconvolution, multiplexing, and automated machine learning (AutoML) were used to determine the proportion of total methylation in related genes.

Item Type:	Article
Uncontrolled Keywords:	Adipose tissue; Apoptosis; cfDNA; Methylation; T2DM
Subjects:	Q Science > Q Science (General) R Medicine > R Medicine (General)
Divisions:	Faculty of Technobiology > Department of Biology
Depositing User:	Sulistyo Emantoko 61116
Date Deposited:	03 Jan 2023 02:00
Last Modified:	03 Jan 2023 02:00
URI:	http://repository.ubaya.ac.id/id/eprint/43041

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